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Orchidaceae Floral Transcriptome Release Summary(2012.10.1)


Species

Library Name

Total Reads

Unigene Number

Average Length of Unigenes(bp)

Apostasia shenzhenica

Ap_fb

52,977,780

91,487

388

Neuwiedia malipoensis

Ne_fb

52,977,780

163,824

356

Vanilla shenzhenica

Va_fb

84,345,944

486,570

217

Galeola faberi

Ga_fb

52,977,780

128,749

350

Paphiopedilum armeniacum

Pa_fb

63,011,468

121,043

357

Cypripedium singchii

Ch_fb

73,504,160

138,941

362

Habenaria delavayi

Ha_fb

72,664,184

110,940

353

Hemipilia forrestii

Hem_fb

73,144,276

113,458

343

Phalaenopsis equestris

Pe_fb

70,571,268

95,820

379

Cymbidium sinense

Cym_fb

66,096,722

111,239

367


Phalaenopsis Transcriptome Release Summary(2010.10.15)

 

Library Name

Species

Tissue

EST

 

 

AECP

P. aphrodite

protocorm

EFCP

P. equestris

mature flower bud

VFCP

P. bellina

mature flower bud without labellum

FL- cDNA

FAECPM

P. aphrodite

seed after imbibition

FPEAECP

P. aphrodite

developing seed

FEVCP

P. equestris

vegetative tissue

FCTEVCP

P. equestris

cold-treated plantlet

FPTEVCPM

P. equestris

pathogen-treated plantlet

FEICP

P. equestris

inflorescence

454

454

P.aphrodite,

P. equestris

P. bellina

mixed tissues:

Inflorescences, flower buds, leaves and roots were sampled from P.equestris.

The protocorms and the spikes were  from P. aphrodite.

The P. bellina flowers were also collected at day 5 post anthesis.

Solexa

Solexa

P. equestris

leaf


Library NameNumber of Reads Number of Unigene Sequences
Sanger Sequencing


EST10,495 9,393
FL- cDNA Libraries30,81513,738
Subtotal41,31023,131
NGS
454206,960 43,013
Solexa37,701,072 49,418

Subtotal

37,908,032 92,431
Total Read 37,979,342  
Unigene Database

84,617 (8,501 contigs and 76,116 singletons )