Home [Orchid Unigene Database]
Library Name: Contig Lists:
Contig Information:

Library Name	Query Name	Length of query
OrchidUnigene	ConsensusfromContig1002_Average_coverage__2.15	768

ConsensusfromContig1002_Average_coverage__[Green Color:forward,Red Color:Reverse]

LN:768
FCTEVCPContig[1037]
Singletons20040
FXQQ4OB02H23HT
FXQQ4OB01EKL88

Sequences View:[ConsensusfromContig1002_Average_coverage__](Contig Seguence)

Sequences View:[ConsensusfromContig1002_Average_coverage__](Singleton Sequence)

Contig Annotation:

GenBank	Accession number (Best hits in the GenBank)	Annotation	Species	Length of homologous protein(Amino Acid)	Score	Expect value	Identities	similarity	Frame
ref	XP_001782066.1	predicted protein	Physcomitrella patens subsp. patens	329	436 bits (1121)	e-120	202/238 (84%)	222/238 (93%)	+3

KEGG Pathway	GO
ConsensusfromContig1002_Average_coverage__[2 Pathway]	ConsensusfromContig1002_Average_coverage__[8 GoTerm]

Pathway Informations
First-level terms	Second-level terms	KEGG pathway Num	KEGG pathway Name	KEGG pathway Description	contig Name	locusName	project Name
Genetic Information Processing	Transcription	03040	Spliceosome	[PATH:ath03040]	ConsensusfromContig1002	AT5G56130	OrchidUnigene
Genetic Information Processing	Translation	03013	RNA transport	[PATH:ath03013]	ConsensusfromContig1002	AT5G56130	OrchidUnigene

GO Informations
Locus Name	Go Name	Go Class Descriptions	GO id	Anotations01
AT5G56130	AT5G56130	nucleotide binding	GO:0000166	nucleotide binding
AT5G56130	AT5G56130	gene silencing by RNA	GO:0031047	other cellular processes
AT5G56130	AT5G56130	production of ta-siRNAs involved in RNA interference	GO:0010267	other cellular processes
AT5G56130	AT5G56130	production of ta-siRNAs involved in RNA interference	GO:0010267	other metabolic processes
AT5G56130	AT5G56130	nucleotide binding	GO:0000166	nucleotide binding
AT5G56130	AT5G56130	gene silencing by RNA	GO:0031047	other cellular processes
AT5G56130	AT5G56130	production of ta-siRNAs involved in RNA interference	GO:0010267	other cellular processes
AT5G56130	AT5G56130	production of ta-siRNAs involved in RNA interference	GO:0010267	other metabolic processes

Gene Network Informations
Gene Network	Interact with..
ConsensusfromContig1002[interact with..]	ConsensusfromContig3148 ConsensusfromContig7282 ConsensusfromContig2201

Query Name	Length of query	GenBank	Accession number(Best hits in the GenBank)	Annotation	Species	Length of homologous protein(Amino Acid)	Score	Expect value	Identities	similarity	Frame
ConsensusfromContig3148_Average_coverage__6.64	1059	emb	CBI15705.1	unnamed protein product	Vitis vinifera	300	377 bits (968)	e-102	190/237 (80%)	195/237 (82%)	+2
ConsensusfromContig7282_Average_coverage__4.69	961	emb	CBI15705.1	unnamed protein product	Vitis vinifera	300	402 bits (1033)	e-110	202/243 (83%)	212/243 (87%)	-1
ConsensusfromContig2201_Average_coverage__3.47	639	ref	NP_001057314.1	Os06g0256200	Oryza sativa (japonica cultivar-group)	294	189 bits (479)	2e-46	104/197 (52%)	132/197 (67%), Gaps = 8/197 (4%)	-1